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Original Research

Open Access

Elimination of E. faecalis from primary root canals using a non-instrumentation technique and rotary systems: an ex-vivo study

  • Merve Ozdemir1
  • Aysenur Oncu2
  • Betül Aydın3
  • Ecem Ozgur2
  • Akif Demirel4,*,
  • Berkan Celikten2

1Department of Pediatric Dentistry, Faculty of Dentistry, Lokman Hekim University, 06510 Ankara, Turkey

2Department of Endodontics, Faculty of Dentistry, Ankara University, 06560 Ankara, Turkey

3Department of Biology, Faculty of Sciences, Gazi University, 06500 Ankara, Turkey

4Department of Pediatric Dentistry, Faculty of Dentistry, Ankara University, 06560 Ankara, Turkey

DOI: 10.22514/jocpd.2026.029

Submitted: 19 November 2025 Accepted: 21 January 2026

Online publish date: 27 February 2026

*Corresponding Author(s): Akif Demirel E-mail: akifdemirel@ankara.edu.tr

Abstract

Background: Biofilm removal plays a key role in the long-term success of root canal therapy. This ex-vivo study aimed to compare the antibacterial efficacy of two rotary instrumentation systems (ProTaper Ultimate and Pro AF Baby Gold) and an irrigation-based non-instrumentation endodontic treatment (NIET) in eliminating Enterococcus faecalis (E. faecalis) biofilms from extracted mandibular second primary molars. Methods: A total of 45 extracted mandibular second primary molars were used. Only teeth with at least two-thirds of the root length intact and without structural anomalies were included. Five teeth served as a negative control group, while the remaining 40 were contaminated with E. faecalis and randomly assigned to four groups (n = 10) based on the preparation technique. Group 1: irrigation-only NIET; Group 2: ProTaper Ultimate; Group 3: Pro AF Baby Gold; and a positive control group (no instrumentation or irrigation) comprised the study groups. After treatment, biofilm samples were collected, and bacterial load was quantified by colony-forming unit (CFU) counting. Data were analyzed with the Kruskal-Wallis H test with Dunn’s multiple comparisons for post hoc pairwise testing and the Mann-Whitney U test. Statistical significance level was set at 0.05. Results: The median bacterial counts were 7.99 in the control group, 6.81 in Group 1, 4.73 in Group 2, and 0.00 in Group 3. Group 1 showed no significant difference from the control group (p = 0.3985), but differed significantly from Group 2 (p = 0.0031) and Group 3 (p < 0.0001). Both rotary systems effectively reduced E. faecalis biofilms, with the highest efficacy observed in Group 3. In contrast, NIET provided limited bacterial reduction. Conclusions: While NIET may be useful in pediatric patients, its limited antibacterial efficacy highlights the need for further improvement before it can be considered a reliable clinical alternative.


Keywords

Enterococcus faecalis; Primary molars; Root canal treatment; Non-instrumentation endodontic treatment


Cite and Share

Merve Ozdemir,Aysenur Oncu,Betül Aydın,Ecem Ozgur,Akif Demirel,Berkan Celikten. Elimination of E. faecalis from primary root canals using a non-instrumentation technique and rotary systems: an ex-vivo study. Journal of Clinical Pediatric Dentistry. 2026.doi:10.22514/jocpd.2026.029.

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